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Process data for the Pregnancy 24/7 study

process_data.Rd

Process the Actiwatch, sleep diary, and activPAL data for the Pregnancy 24/7 study.

Usage

process_data(
  subject,
  trimester,
  sleep_source,
  day1 = TRUE,
  day2 = TRUE,
  day3 = TRUE,
  day4 = TRUE,
  day5 = TRUE,
  day6 = TRUE,
  day7 = TRUE,
  day8 = TRUE,
  day9 = TRUE
)

Arguments

subject

A character vector denoting the Pregnancy 24/7 subject.

trimester

A character or integer vector denoting trimester of pregnancy.

sleep_source

Either a path to a file, a connection, or literal data (either a single string or a raw vector). This is an intermediate parameter to file parameter of read_sleep(), which requires a CSV file type.

day1

Logical denoting this a valid day of wear for day 1 of the wear period. Default is TRUE.

day2

Logical denoting this a valid day of wear for day 2 of the wear period. Default is TRUE.

day3

Logical denoting this a valid day of wear for day 3 of the wear period. Default is TRUE.

day4

Logical denoting this a valid day of wear for day 4 of the wear period. Default is TRUE.

day5

Logical denoting this a valid day of wear for day 5 of the wear period. Default is TRUE.

day6

Logical denoting this a valid day of wear for day 6 of the wear period. Default is TRUE.

day7

Logical denoting this a valid day of wear for day 7 of the wear period. Default is TRUE.

day8

Logical denoting this a valid day of wear for day 8 of the wear period. Default is TRUE.

day9

Logical denoting this a valid day of wear for day 9 of the wear period. Default is TRUE.

Details

This function is based on the specific needs of the Pregnancy 24/7 study. Thus, the decision to only include parameters day1 through day9 to denote valid wear days was because the wear period for Pregnancy 24/7 only lasted nine days. If added day parameters are needed, this function can be adjusted for that change by either

  • adding a specific day parameter or

  • creating a new parameter that is a logical vector that is length of wear period and removing the day parameters.

The day parameters only need to be specified when a day is invalid and to make that specification have day = FALSE.

The entire creation of this function depends on the other functions in the pregnancy247 package. There is no R object returned by this function, but files are written to their appropriate locations based on the subject and trimester parameters.

Due to nature of the observational data, there is an inclusion of a second interval of napping for each wear day. This is implemented through windows_nap().

Examples

if (FALSE) { # \dontrun{
# 0001-AB ####
## Trimester 1 ####
process_data(
 subject = "0001-AB", trimester = 1, sleep_source = "./sleep.csv"
)
} # }